Section 5 GElyser

5.1 Interface

Input

  • Step 1: Enter a list of genes. Please ensure that the input gene identifiers are official symbols; otherwise, the error messages will be prompted.

  • Step 2: Select from a list of supported ontologies.

  • More Controls: Use additional parameters to fine-tune the above steps.

  • SUBMIT: click the SUBMIT button to execute the analysis.

Output

  • Example Output includes interactive tables and high-quality figures for enrichment results. A summary of input data and the server-side computation runtime is also returned for reference.
The interface of `GElyser`, including the `Show/Hide Info` toggle button that contains the help information on inputs, outputs, and other information.

FIGURE 5.1: The interface of GElyser, including the Show/Hide Info toggle button that contains the help information on inputs, outputs, and other information.

5.2 Results

  • Under the Input: Gene Information tab, An interactive table displays the user-input gene list.
The user-input data displayed under the `Input: Gene Information` tab returned for exploration.

FIGURE 5.2: The user-input data displayed under the Input: Gene Information tab returned for exploration.


  • Under the Output: Enriched Terms tab, An interactive table lists enriched ontology terms.
An interactive table listing enriched ontology terms under the `Output: Enriched Terms` tab.

FIGURE 5.3: An interactive table listing enriched ontology terms under the Output: Enriched Terms tab.


  • Under the tab Output: Dotplot, An dotplot illustrates enriched ontology terms. The downloadable pdf file is also provided.
A dotplot for enriched ontology terms.

FIGURE 5.4: A dotplot for enriched ontology terms.


  • Under the Output: Forest Plot tab, A forest plot illustrates enriched ontology terms. The downloadable pdf file is also provided.
A forest plot for enriched ontology terms.

FIGURE 5.5: A forest plot for enriched ontology terms.